MerchantPick

Best Accounting apps for Shopify

Last updated: Jul 17, 2026

  1. #1. Sync your retail and B2B sales activity to QuickBooks

    QuickBooks Online screenshot
    QuickBooks Online icon

    QuickBooks Online

    by Intuit

    4.8 ★ (3,164) Free plan available

    Accurate accounting for retail and B2B sales, payments, and product details

  2. #2. Easy premade and custom reports: filter, schedule, and more.

    Data Export IO: Reports screenshot
    Data Export IO: Reports icon

    Data Export IO: Reports

    by Estore Automate

    5.0 ★ (1,905) From $7/month

    Helpful pre-made and detailed reporting for all store data. Easily filter, export, and send reports.

  3. #3. Create custom reports, combine data, and automate delivery

    Report Pundit: Custom Reports screenshot
    Report Pundit: Custom Reports icon

    Report Pundit: Custom Reports

    by Estore Automate

    5.0 ★ (1,852) Free plan, paid from $9/month

    Build custom reports, automate reports & analytics, and reconcile data from key integrations easily

  4. #4. Premium reporting & analytics to explore and export your data.

    BR ‑ Better Reports screenshot
    BR ‑ Better Reports icon

    BR ‑ Better Reports

    by Better Reports Technologies

    5.0 ★ (1,135) From $19.9/month

    Powerful reporting & analytics. Explore your data and automate reports. Custom report service.

  5. #5. Sync Quickbooks Online, Xero & Automate Accounting & Inventory

    Webgility ‑ QuickBooks Online  screenshot
    4.9 ★ (869) From $79/month

    Stop guessing payouts & inventory. Auto-sync Ecommerce store to QuickBooks with sales and refunds

  6. #6. Multi-store reports, profit, tax & LTV analytics + export

    Mipler ‑ Custom Reports screenshot
    Mipler ‑ Custom Reports icon

    Mipler ‑ Custom Reports

    by Mirasvit Ecommerce Solutions

    5.0 ★ (590) Free plan, paid from $19.99/month

    Custom reports, dashboards & profit analytics for sales, tax, inventory & LTV. Export to Sheets.

  7. #7. Automate accounting, inventory and payout reconciliation

    Webgility x QuickBooks Desktop screenshot
    4.9 ★ (473) From $139/month

    No Bookkeeping Errors with real-time Sync for orders, inventory, payouts & more - QuickBooks Desktop

  8. #8. Automated, accurate accounting in QuickBooks Online or Xero

    A2X Sync for QuickBooks & Xero screenshot
    A2X Sync for QuickBooks & Xero icon

    A2X Sync for QuickBooks & Xero

    by A2X Software Limited

    5.0 ★ (338) From $29/month

    Have confidence in your numbers with accurate & automated ecommerce accounting in QuickBooks or Xero

  9. #9. Automated eCommerce Accounting with Easy Sync & Reconciliation

    Xero Bridge by Parex screenshot
    Xero Bridge by Parex icon

    Xero Bridge by Parex

    by Parex Technologies Pvt Ltd

    4.9 ★ (287) From $15/month

    Sync sales data to Xero easily in an automated manner - individual orders or summary sync options

  10. #10. Increase efficiency with custom reporting and data analysis

    Report Toaster: Custom Reports screenshot
    5.0 ★ (203) Free plan, paid from $18/month

    Advanced reports, using real-time data that you can report, customize, automate, export, and share.

Rating source: Shopify App Store.

How we ranked the best Accounting apps for Shopify

We rank Accounting apps by their Shopify App Store rating and review volume, weighted by how well each fits the use case. Ratings, pricing and free-plan details are pulled from every app's live listing and refreshed regularly.

  • Rating and review volume from the Shopify App Store
  • Category fit and how often merchants install each app
  • Pricing and free-plan transparency

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