MerchantPick

Best Accounting apps for Shopify

Last updated: Sep 11, 2026

  1. #1. Create custom reports, combine data, and automate delivery

    Report Pundit: Custom Reports screenshot
    Report Pundit: Custom Reports icon

    Report Pundit: Custom Reports

    by Estore Automate

    5.0 ★ (2,026) Free plan, paid from $9/month

    Shopify Report customizations, automated report scheduling, and 30+ app data integration to analyze Sales, Inventory, Tax, Payout, Shipping, Customers, and more

  2. #2. Easy premade and custom reports: filter, schedule, and more.

    Data Export IO: Report screenshot
    Data Export IO: Report icon

    Data Export IO: Report

    by Estore Automate

    5.0 ★ (2,005) From $12/month

    Offering convenient pre-made reports for Shopify stores. 15+ reporting categories (orders, tax, etc) to arrange data. Schedule reports to email, FTP, and more.

  3. #3. Sync your retail and B2B sales activity to QuickBooks

    QuickBooks Online screenshot
    QuickBooks Online icon

    QuickBooks Online

    by Intuit

    4.7 ★ (3,299) Free plan available

    Sync Shopify retail and B2B sales activity to QuickBooks

  4. #4. Premium reporting & analytics to explore and export your data.

    BR ‑ Better Reports screenshot
    BR ‑ Better Reports icon

    BR ‑ Better Reports

    by Better Reports Technologies

    5.0 ★ (1,148) From $19.9/month

    Explore all your store data. Flexible custom reports and metrics. Share, export and automate your reports. 14-day free trial. Free report building service.

  5. #5. TrueProfit tracks accurate Net Profit with real-time analytics

    TP: True Profit Analytics screenshot
    TP: True Profit Analytics icon

    TP: True Profit Analytics Trending

    by TrueProfit Real-time Profit & LTV tracking

    5.0 ★ (899) From $35/month

    Net Profit Analytics for Shopify. Instantly know your true Net profit. Profit calculator, P&L report, LTV, Product Analytics & Marketing Attribution.

  6. #6. Sync Quickbooks Online, Xero & Automate Accounting & Inventory

    Webgility ‑ QuickBooks Online  screenshot
    4.9 ★ (874) From $79/month

    Webgility connects Shopify to QuickBooks Online & Xero, so orders, expenses, inventory, and more are consistent, reducing errors and manual data entry.

  7. #7. Custom reports & accounting beyond built-in analytics

    Mipler ‑ Advanced Reports screenshot
    Mipler ‑ Advanced Reports icon

    Mipler ‑ Advanced Reports

    by Mirasvit Ecommerce Solutions

    5.0 ★ (630) Free plan, paid from $14.99/month

    Mipler helps you build advanced Shopify reports for sales, inventory, taxes, and payouts. Export data, schedule reports, and analyze store performance.

  8. #8. Automate accounting, inventory and payout reconciliation

    Webgility x QuickBooks Desktop screenshot
    4.9 ★ (485) From $139/month

    Webgility connects Shopify to QuickBooks Desktop, so orders, expenses, payouts and inventory are accurate without any manual work.

  9. #9. Automated, accurate accounting in QuickBooks Online or Xero

    A2X Sync for QuickBooks & Xero screenshot
    A2X Sync for QuickBooks & Xero icon

    A2X Sync for QuickBooks & Xero

    by A2X Software Limited

    5.0 ★ (360) From $29/month

    Join the thousands of merchants, accountants, and bookkeepers that trust A2X to accurately automate their Shopify accounting in QuickBooks Online or Xero.

  10. #10. Automated eCommerce Accounting & Reconciliation with Xero

    Xero Bridge by Parex screenshot
    Xero Bridge by Parex icon

    Xero Bridge by Parex

    by Parex Technologies Pvt Ltd

    4.9 ★ (305) From $15/month

    Shopify to Xero integration

Rating source: Shopify App Store.

How we ranked the best Accounting apps for Shopify

We rank Accounting apps by their Shopify App Store rating and review volume, weighted by how well each fits the use case. Ratings, pricing and free-plan details are pulled from every app's live listing and refreshed regularly.

  • Rating and review volume from the Shopify App Store
  • Category fit and how often merchants install each app
  • Pricing and free-plan transparency

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